Explore the full range of individual programs available on Phylogeny.fr
Compare your sequence using BLAST Search.
Fast and accurate sequence alignment.
Advanced alignment with 3D support.
Fast and scalable multiple sequence alignment.
Multiple sequence alignment using Fast Fourier Transform.
Entropy-based alignment cleaning.
Fast and accurate alignment trimming.
Remove poorly aligned regions from alignments.
Maximum likelihood phylogeny.
Distance-based tree estimation.
Bayesian inference of phylogeny.
Phylogenetic inference using maximum likelihood.
Large-scale ML-based phylogenetic analyses.
Approximately-maximum-likelihood phylogenetic trees.
Interactive phylogenetic tree viewer — upload a Newick file, explore branch lengths, bootstrap values, and optionally overlay a sequence alignment.
Interactive multiple sequence alignment viewer — upload a FASTA file and explore residues with zoom, color coding, and sequence search.
Convert between biological file formats.