Phylogeny.fr
A comprehensive, simple-to-use platform for phylogenetic analysis
🔬 Ready-to-use Pipelines
Run pre-configured pipelines for fast and accurate phylogenetic analysis.
🧬 Customizable Workflows
Advanced users can choose from a-la-carte tools to tailor their workflow.
📊 Result Visualization
Generate high-quality phylogenetic trees with downloadable formats.
Acknowledgments & Citations
If you use results from this site for publication, as I am managing it alone since years, could you please add this to the acknowledgments section (and let me know):
Sebastien Santini (CNRS/AMU IGS UMR7256) and the PACA Bioinfo platform for the availability and management of the phylogeny.fr website used to...
Please also remember to cite the individual tools you used, not just this platform. Ready-to-copy references for each tool are available directly on the result pages.
Please cite the following publication for the platform:
- Phylogeny.fr: Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O.
Phylogeny.fr: robust phylogenetic analysis for the non-specialist.
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9.
🧬 One Click
Paste your sequences and let the platform decide the best pipeline for you.
⚙️ Advanced
Manually adjust parameters and take control of each step in the workflow.
📦 A la Carte
Build your own pipeline by choosing each tool individually.
🔍 BLAST Explorer
Paste a sequence, run a BLAST, and explore homologs.
🧰 Online Tools
Use individual programs like MUSCLE, Iq-Tree, ClipKit and more directly.